Create minimal SingleCellExperiment for documentation examples.

exampleSCE(nrow = 8, ncol = 12, n_genes = 100, n_PCs = 10)

Arguments

nrow

Number of rows of spots

ncol

Number of columns of spots

n_genes

Number of genes to simulate

n_PCs

Number of principal components to include

Value

A SingleCellExperiment object with simulated counts, corresponding logcounts and PCs, and positional data in colData. Spots are distributed over an (nrow x ncol) rectangle.

Details

Inspired by scuttle's mockSCE().

Examples

set.seed(149) sce <- exampleSCE()